Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS): Publications

On this page is a list of publications that include CIPARS authors. Publications that used CIPARS data are listed under "CIPARS publications" and those that did not use CIPARS data are listed under "CIPARS-affiliated publications". Publications are listed by the year they were published beginning with the most recent. This page also contains a section for summaries of CIPARS research projects.*

*These publication lists and summaries are not exhaustive.

CIPARS publications

Publication year	Reference
2025	Tran TT, Checkley S, Caffrey N, Mainali C, Gow S, Agunos A, Liljebjelke K. Characterization of antimicrobial resistance in Campylobacter species from broiler chicken litter. Antibiotics. 2025; 14(8):759. https://doi.org/10.3390/antibiotics14080759.
2025	Mistry K, Thumbi D, Li XR, Charlebois A, Avery BP, Deckert AE, Murphy C, Kearney A, Campbell J, Christianson S, Alexander DC, Bailey SE, Bekal S, Chui L, Ding X, Dingle T, Haldane D, Hoang L, Minion J, Patel S, Zahariadis G, Nadon C, Mulvey MR, Carson CA, Reid-Smith RJ, and Amrita Bharat. One health study of mobile colistin resistance (mcr) in Salmonella enterica in Canada, 2017-2022. Microbiology Spectrum. 2025; May 19:e0215624. doi: 10.1128/spectrum.02156-24. PMID: 40387317.
2025	Wilke MAP, Mistry K, Thumbi D, Li XRL, Charlebois A, Cormier AC, Mickanuck K, Avery BP, Murphy C, Deckert A, Kearney A, Campbell J, Christianson S, Alexander D, El Bailey S, Bekal S, Chui L, Ding X, Dingle TC, Haldane D, Hoang L, Minion J, Patel S, Zahariadis G, Nadon C, Mulvey M, Carson CA, Reid-Smith R, Bharat A. Molecular epidemiology and in silico prediction of ciprofloxacin resistance in Salmonella enterica in Canada, 2017-2022. Can J Microbiol. 2025; Mar 3. doi: 10.1139/cjm-2024-0118. PMID: 40030142.
2025	Medrano H, Hill S, Boulianne M, Cereno T, Deckert AE, Charlebois A, Gow SP, McDonald K, Reid-Smith RJ, Agunos A. Widespread dissemination of Salmonella , Escherichia coli and Campylobacter resistant to medically important antimicrobials in the poultry production continuum in Canada. PlosOne 2025; 20(2): e0319086. https://doi.org/10.1371/journal.pone.0319086.
2024	Bosman AL, Uhland F, Agunos A, Carson CA. One Health surveillance of antimicrobial resistance and use by the Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS). Can Vet J 2024; Oct;65(10):1081-1085. PMID: 39355704; PMCID: PMC11411476. https://pubmed.ncbi.nlm.nih.gov/39355704/
2024	Medrano H, Lee L, Young V, Janecko N, Deckert AE, Gow SP, Reid-Smith RJ, Agunos A. Surveillance of antimicrobial resistance in Escherichia coli, Salmonella, and Campylobacter recovered from laying hens, their environment and products in Canada indicated a stable level of resistance to critically important antimicrobials, in varying time periods between 2007 and 2021. International Journal of Food Microbiology 2024; 412: 110541. doi: 10.1016/j.ijfoodmicro.2023.110541.
2023	Shrestha RD, Agunos A, Gow SP, Varga C. Assessing antimicrobial resistance in Campylobacter jejuni and Campylobacter coli and its association with antimicrobial use in Canadian turkey flocks. Epidemiol Infect. 2023 Sep 5:1-48. doi: 10.1017/S0950268823001462.
2023	Shrestha RD, Agunos A, Gow SP, Deckert AE, Varga C. Decrease in the prevalence of antimicrobial resistance in Escherichia coli isolates of Canadian turkey flocks driven by the implementation of an antimicrobial stewardship program. PLoS One. 2023 Jul 24;18(7):e0282897. doi: 10.1371/journal.pone.0282897.
2023	Sodagari HR, Shrestha RD, Agunos A, Gow SP, Varga C. Comparison of antimicrobial resistance among Salmonella enterica serovars isolated from Canadian turkey flocks, 2013 to 2021. Poult Sci. 2023 Jun;102(6):102655. doi: 10.1016/j.psj.2023.102655.
2022	Bharat A, Mataseje L, Parmley EJ, Avery BP, Cox G, Carson CA, Irwin RJ, Deckert AE, Daignault D, Alexander DC, Allen V, El Bailey S, Bekal S, German GJ, Haldane D, Hoang L, Chui L, Minion J, Zahariadis G, Reid-Smith RJ, Mulvey MR. One Health Genomic analysis of extended-spectrum β-lactamase‒producing Salmonella enterica, Canada, 2012‒2016. Emerg Infect Dis 2022;28(7):1410-1420 doi:10.3201/eid2807.211528.
2022	Bharat A, Petkau A, Avery BP, Chen JC, Folster JP, Carson CA, Kearney A, Nadon C, Mabon P, Thiessen J, Alexander DC, Allen V, El Bailey S, Bekal S, German GJ, Haldane D, Hoang L, Chui L, Minion J, Zahariadis G, Domselaar GV, Reid-Smith RJ, Mulvey MR. Correlation between phenotypic and In Silico detection of antimicrobial resistance in Salmonella enterica in Canada using Staramr. Microorganisms. 2022;10(2):292 doi:10.3390/microorganisms10020292.
2022	Bosman AL, Deckert AE, Poljak Z, Carson CA, Reid-Smith RJ, McEwen SA. Antimicrobial use in lactating sows, piglets, nursery, and grower-finisher pigs on swine farms in Ontario, Canada during 2017 and 2018. Porc Health Manag 2022; 8(17) doi:10.1186/s40813-022-00259-w.
2022	Cox GW, Avery BP, Parmley EJ, Irwin RJ, Reid-Smith RJ, Deckert AE, Finley RL, Daignault D, Zhanel GG, Mulvey MR, Bharat A. A One Health genomic investigation of gentamicin resistance in Escherichia coli from human and chicken sources in Canada, 2014 to 2017. Antimicrob Agents Chemother 2022;66(10) doi:10.1128/aac.00677-22.
2022	Fonseca M, Heider LC, Léger D, Mcclure JT, Rizzo D, Dufour S, Kelton DF, Renaud D, Barkema HW, Sanchez J. Canadian Dairy Network for Antimicrobial Stewardship and Resistance (CaDNetASR): An on-farm surveillance system Front Vet Sci. 2022;8 doi: 10.3389/fvets.2021.799622.
2022	Hetman BM, Pearl DL, Barker DOR, Robertson J, Nash JHE, Reid-Smith R, Agunos A, Carrillo C, Topp E, Van Domselaar G, Parmley EJ, Bharat A, Mulvey M, Allen V, Taboada EN. Combining analytical epidemiology and genomic surveillance to identify risk factors associated with the spread of antimicrobial resistance in Salmonella enterica subsp. enterica serovar Heidelberg. Microb Genom 2022;8(11) doi:10.1099/mgen.0.000891.
2022	Léger DF, Anderson MEC, Bédard FD, Burns T, Carson CA, Deckert AE, Gow SP, James C, Li XZ, Ott M, Agunos A. Canadian collaboration to identify a minimum dataset for antimicrobial use surveillance for policy and intervention development across food animal sectors. Antibiotics (Basel) 2022;11(2):226 doi: 10.3390/antibiotics11020226.
2022	Loest D, Uhland FC, Young KM, Li X-Z, Mulvey MR, Reid-Smith R, Sherk LM, Carson CA. Carbapenem-resistant Escherichia coli from shrimp and salmon available for purchase by consumers in Canada - A risk profile using the Codex framework. Epidemiology & Infection. 2022;150(e148) doi.org/10.1017/S0950268822001030.
2022	Primeau CA, Bharat A, Janecko N, Carson CA, Mulvey M, Reid-Smith R, McEwen S, McWhirter JE, Parmley EJ. Integrated surveillance of extended-spectrum beta-lactamase (ESBL)-producing Salmonella and Escherichia coli from humans and animal species raised for human consumption in Canada from 2012 to 2017. Epidemiol Infect 2022;151(e14) doi:10.1017/S0950268822001509.
2022	Shrestha RD, Agunos A, Gow SP, Deckert AE, Varga C. Associations between antimicrobial resistance in fecal Escherichia coli isolates and antimicrobial use in Canadian turkey flocks. Front Microbiol. 2022;13 doi: 10.3389/fmicb.2022.954123.
2022	Tan DT, Mulvey MR, Zhanel GG, Bay DC, Reid-Smith RJ, Janecko N, Golding GR. A Clostridioides difficile surveillance study of Canadian retail meat samples from 2016-2018. Anaerobe 2022;74 doi:10.1016/j.anaerobe.2022.102551.
2021	Agunos A, Gow SP, Deckert A, et al. Informing stewardship measures in Canadian food animal species through integrated reporting of antimicrobial use and antimicrobial resistance surveillance data—part I, Methodology development. Pathogens. 2021;10(11):1492 doi.org/10.3390/pathogens10111492.
2021	Agunos A, Gow SP, Deckert A, et al. Informing stewardship measures in Canadian food animal species through integrated reporting of antimicrobial use and antimicrobial resistance surveillance data—part II, Application. Pathogens. 2021;10(11):1491 doi.org/10.3390/pathogens10111491.
2021	Agunos A, Gow SP, Léger DF, et al. Antimicrobial resistance and recovery of Salmonella, Campylobacter, and Escherichia coli from chicken egg layer flocks in Canadian sentinel surveillance sites using 2 types of sample matrices. Can J Vet Res 2021;85:27-35 doi:cjvr_01_27 [pii].
2021	Bharat A, Murphy CP, Mulvey MR, et al. Antimicrobial-resistant nontyphoidal Salmonella infections, United States, 2004-2016. Emerg Infect Dis. 2021 Oct;27(10):2746 doi: 10.3201/eid2710.211339.
2021	Bosman A, Deckert A, Carson C, et al. Choosing which metrics to use when reporting antimicrobial use information to veterinarians in the Canadian swine industry. Can Vet J 2021;62:453-460.
2021	Cox GW, Parmley EJ, Avery BP, Irwin RJ, Reid-Smith RJ, Deckert AE, Finley RL, Daignault D, Alexander DC, Allen V, El Bailey S, Bekal S, Chui L, German GJ, Haldane D, Hoang L, Minion J, Zahariadis G, Mulvey MR, Bharat A. A One-Health genomic investigation of gentamicin resistance in Salmonella from human and chicken sources in Canada, 2014 to 2017. Antimicrob Agents Chemother 2021;65(12) doi:10.1128/AAC.00966-21.
2021	Tran T, Checkley S, Caffrey N, et al. Genetic characterization of AmpC and extended-spectrum beta-lactamase phenotypes in Escherichia coli and Salmonella from Alberta broiler chickens. Front Cell Infect Microbiol 2021;11:622195 doi:10.3389/fcimb.2021.622195 [doi].
2020	Agunos A, Gow S, Léger D, et al. Antimicrobial use indices—the value of reporting antimicrobial use in multiple ways using data from Canadian broiler chicken and turkey farms. Front Vet Sci 2020;7 doi:10.3389/fvets.2020.567872.
2020	Drame O, Leclair D, Parmley EJ, et al. Antimicrobial resistance of Campylobacter in broiler chicken along the food chain in Canada. Foodborne Pathog Dis 2020;17:512-20 doi:10.1089/fpd.2019.2752 [doi].
2019	Agunos A, Gow S, Léger D, et al. Antimicrobial use and antimicrobial resistance indicators - integration of farm-level surveillance data from broiler chickens and turkeys in British Columbia, Canada. Front Vet Sci 2019;6:131 doi: 10.3389/fvets.2019.00131.
2019	Agunos A, Deckert A, Léger D, et al. Antimicrobials used for the therapy of necrotic enteritis and coccidiosis in broiler chickens and turkeys in Canada, Farm Surveillance results (2013-2017). Avian Dis 2019;63:433-45 doi:10.1637/11971-091718-Reg.1 [doi].
2019	Bosman A, Loest D, Carson C, et al. Developing Canadian defined daily doses for animals: a metric to quantify antimicrobial use. Front in Vet Sci 2019;6:220 doi:10.3389/fvets.2019.00220.
2018	Agunos A, Arsenault RK, Avery BP, et al. Changes in antimicrobial resistance levels among Escherichia coli, Salmonella, and Campylobacter in Ontario broiler chickens between 2003 and 2015. Can J Vet Res 2018;82:163-77 doi:cjvr_07_163 [pii].
2018	MacKinnon MC, Pearl DL, Carson CA, et al. A comparison of modelling options to assess annual variation in susceptibility of generic Escherichia coli isolates to ceftiofur, ampicillin and nalidixic acid from retail chicken meat in Canada. Prev Vet Med 2018;160:123-35 doi:S0167-5877(17)30732-8 [pii].
2018	MacKinnon MC, Pearl DL, Carson CA, et al. Comparison of annual and regional variation in multidrug resistance using various classification metrics for generic Escherichia coli isolated from chicken abattoir surveillance samples in Canada. Prev Vet Med 2018;154:9-17 doi:S0167-5877(17)30798-5 [pii].
2017	Agunos A, Léger DF, Carson CA, et al. Antimicrobial use surveillance in broiler chicken flocks in Canada, 2013-2015. PLoS One 2017;12:e0179384 doi:10.1371/journal.pone.0179384 [doi].
2014	Agunos A, Léger DF, Avery BP, et al. Ciprofloxacin-resistant Campylobacter in broiler chicken in Canada. Can Commun Dis Rep 2014;40:36-41 doi:40S206 [pii].
2013	Agunos A. Antimicrobial therapy of bacterial diseases in broiler chickens - a reply. Can Vet J 2013;54:201-2 doi:cvj_03_201b [pii].
2013	Agunos A, Léger D, Avery BP, et al. Ciprofloxacin-resistant Campylobacter spp. in retail chicken, western Canada. Emerg Infect Dis 2013;19:1121-4 doi:10.3201/eid1907.111417 [doi].
2012	Nesbitt A, Ravel A, Murray R, et al. Integrated surveillance and potential sources of Salmonella enteritidis in human cases in Canada from 2003 to 2009. Epidemiol Infect 2012;140:1757-72 doi:S0950268811002548 [pii].
2010	Deckert A, Gow S, Rosengren L, et al. Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS) Farm Program: results from finisher pig surveillance. Zoonoses Public Health 2010;57 Suppl 1:71-84 doi:10.1111/j.1863-2378.2010.01356.x [doi].
2010	Dutil L, Irwin RJ, Finley R, Ng LK, Avery BP, Boerlin P, et al. Ceftiofur Resistance in Salmonella enterica Serovar Heidelberg from Chicken Meat and Humans, Canada. Emerg Infect Dis. 2010;16(1):48-54. doi: 10.3201/eid1601.090729

CIPARS-affiliated publications

Publication Year	Reference
2024	Poulin-Laprade D, Broadbent J, Biot-Pelletier D, Kraemer S, Griffiths E, Kumar A, Li X-Z, Carrillo CD, Zaheer R, McAllister T, Kullik S, Liebana E, Ricker N, Langlois A, Reid-Smith R, Faucher S, Franklin A, Flores-Vargas G, Bédard É, Summers J, Jarocki V, Thongthum T, Carson CA. Requirements and considerations for effective implementation of integrated One Health antimicrobial resistance research. Can J Microbiol 2025; Jun 24. doi: 10.1139/cjm-2024-0194. PMID: 40554807.
2024	Goltz J, Uhland C, Pearce S, Murphy C, Carson CA, Parmley EJ. Thematic description of factors linked with extended-spectrum beta-lactamase-producing Enterobacteriaceae in humans. Can Commun Dis Rep 2024;50(6):211–22. https://doi.org/10.14745/ccdr.v50i06a04.
2023	Cousins M, Parmley EJ, Greer AL, Neiterman E, Lambraki IA, Graells T, Léger A, Henriksson P J G, Troell M, Wernli D, Søgaard Jørgensen P, Carson CA, Majowicz SE. Is scientific evidence enough? Using expert opinion to fill gaps in data in antimicrobial resistance research. PloS One 2023; 18(8), e0290464. doi: 10.1371/journal.pone.0290464.
2023	Graells T, Lambraki IA, Cousins M, Léger A, Henriksson PJG, Troell M, Carson CA, Parmley EJ, Majowicz SE, Wernli D, Jørgensen PS. Exploring the factors that contribute to the successful implementation of antimicrobial resistance interventions: a comparison of high-income and low-middle-income countries. Frontiers in Public Health 2023; 11, 1230848. doi: 10.3389/fpubh.2023.1230848.
2023	Lambraki IA, Chadag MV, Cousins M, Graells T, Léger A, Henriksson, Troell M, Harbarth S, Wernli D, Søgaard Jørgensen P, Carson CA, Parmley EJ, Majowicz SE. Factors impacting antimicrobial resistance in South East Asian food system and potential places to intervene: A participatory, One Health study. Frontiers in Microbiology 2023. doi: 10.3389/fmicb.2022.992507.
2023	Neustaedter CM, Robertson K, Tschritter D, Reid-Smith RJ, MacKinnon MC, Murphy CP, Chapman B, Neumann NF, Otto SJG. A scoping review of factors associated with antimicrobial-resistant Campylobacter species infections in humans. Epidemiology and Infection 2023; 151, e100. doi: 10.1017/S0950268823000742.
2023	Primeau C, McWhirter JE, McEwen SA, Carson C, Parmley EJ. Exploring medical and veterinary student perceptions and communication preferences related to antimicrobial resistance in Ontario, Canada. BMC Public Health 2023; 23, 483. doi: 10.1186/s12889-023-15193-x.
2023	Strong KM, Marasco KL, Invik J, Ganshorn H, Reid-Smith RJ, Waldner CL, Otto SJG, Kastelic JP, Checkley SL. Factors associated with antimicrobial resistant enterococci in Canadian beef cattle: A scoping review. Frontiers in veterinary science 2023; 10, 1155772. doi: 10.3389/fvets.2023.1155772.
2023	Uhland FC, Li X-Z, Mulvey MR, Reid-Smith R, Sherk LM, Ziraldo H, Jin G, Young KM, Reist M, Carson CA. Extended spectrum β-lactamase-producing enterobacterales of shrimp and salmon available for purchase by consumers in Canada—A risk profile using the Codex Framework. Antibiotics. 2023; 12(9):1412. doi: 10.3390/antibiotics12091412.
2023	Wernli D, Jørgensen, PS, Parmley EJ, Majowicz, SE, Lambraki I, Carson CA, Cousins M, Graells T, Henriksson PJG, Léger A, Harbarth S, Troell M. Scope and applicability of social-ecological resilience to antimicrobial resistance. The Lancet Planetary Health (July) 2023; 7 (7): E630-E637. doi: 10.1016/S2542-5196(23)00128-6.
2022	George PBL, Rossi F, St-Germain MW, Amato P, Badard T, Bergeron MG, Boissinot M, Charette SJ, Coleman BL, Corbeil J, Culley AI, Gaucher ML, Girard M, Godbout S, Kirychuk SP, Marette A, McGeer A, O'Shaughnessy PT, Parmley EJ, Simard S, Reid-Smith RJ, Topp E, Trudel L, Yao M, Brassard P, Delort AM, Larios AD, Létourneau V, Paquet VE, Pedneau MH, Pic É, Thompson B, Veillette M, Thaler M, Scapino I, Lebeuf M, Baghdadi M, Castillo Toro A, Cayouette AB, Dubois MJ, Durocher AF, Girard SB, Diaz AKC, Khalloufi A, Leclerc S, Lemieux J, Maldonado MP, Pilon G, Murphy CP, Notling CA, Ofori-Darko D, Provencher J, Richer-Fortin A, Turgeon N, Duchaine C. Antimicrobial resistance in the environment: Towards elucidating the roles of bioaerosols in transmission and detection of antibacterial resistance genes. Antibiotics 2022;11(7): 974 doi: 10.3390/antibiotics11070974.
2022	Graells TF, Lambraki IA, Cousins M, Léger A, Lillepold K, Henriksson PJG, Troell M, Carson CA, Parmley EJ, Majowicz SE, Wernli D, Jørgensen PS. Studying factors affecting success of antimicrobial resistance interventions through the lens of experience: a thematic analysis. Antibiotics 2022;11(5):639 doi:10.3390/antibiotics11050639.
2022	Isada, M., Reist, M., MacKinnon, M., Uhland, F., Young, K., Gibbens, K., Parmley, J., Carson, C. Characterisation of burden of illness measures associated with human (Fluoro)quinolone-resistant Campylobacter spp. infections – a scoping review. Epidemiology & Infection 2022;150 doi:10.1017/S095026882200139X.
2022	Lambraki IA, Cousins M, Graells T, Léger A, Abdelrahman S, Desbois AP, Gallagher R, Larsson BS, Mattson B, Henriksson P, Troell M, Jørgensen PS, Wernli D, Carson CA, Parmley EJ, Majowicz SE. Governing AMR in a changing climate: A participatory scenario planning approach applied to Sweden in 2050. Frontiers in Public Health 2022;10 doi:10.3389/fpubh.2022.831097.
2022	Lambraki IA; Cousins M, Graells T, Léger A; Henriksson P; Harbarth S; Troell M; Wernli D, Jørgensen PS, Desbois AP; Carson CA; Parmley EJ; Majowicz SE. Factors influencing antimicrobial resistance in the European Food System: A participatory, One Health study. PLOS ONE 2022;8(17) doi.org/10.1371/journal.pone.0263914.
2022	Phillips C, Chapman B, Agunos A, Carson CA, Parmley EJ, Reid-Smith R, Smith BA, CP Murphy. A scoping review of factors potentially linked with antimicrobial-resistant bacteria from turkeys (iAM.AMR Project). Epidemiology and Infection. 2022;150(e158) doi:10.1017/S0950268822001224.
2022	Vogt NA, Hetman BM, Vogt AA, Pearl DL, Reid-Smith RJ, Parmley EJ, Kadykalo S, Janecko N, Bharat A, Mulvey MR, Ziebell K, Robertson J, Nash J, Allen V, Majury A, Ricker N, Bondo KJ, Allen SE, Jardine CM. Rural Raccoons (Procyon lotor) Not Likely to Be a Major Driver of Antimicrobial Resistant Human Salmonella Cases in Southern Ontario, Canada: A One Health Epidemiological Assessment Using Whole-Genome Sequence Data. Front Vet Sci 2022;9 doi: 10.3389/fvets.2022.840416.
2022	Vogt NA, Hetman BM, Vogt AA, Pearl DL, Reid-Smith RJ, Parmley EJ, Kadykalo S, Ziebell K, Bharat A, Mulvey MR, Janecko N, Ricker N, Allen SE, Bondo KJ, Jardine CM. Using whole-genome sequence data to examine the epidemiology of antimicrobial resistance in Escherichia coli from wild meso-mammals and environmental sources on swine farms, conservation areas, and the Grand River watershed in southern Ontario, Canada. PLoS One 2022;17(4) doi:10.1371/journal.pone.0266829.
2021	Caffrey N, Agunos A, Gow S, et al. Salmonella spp. prevalence and antimicrobial resistance in broiler chicken and turkey flocks in Canada from 2013 to 2018. Zoonoses Public Health 2021 doi:10.1111/zph.12769 [doi].
2021	Caffrey N, Agunos A, Gow S, et al. A cross-sectional study of the prevalence factors associated with fluoroquinolone resistant Campylobacter jejuni in broiler flocks in Canada. Prev Vet Med 2021;186:105164 doi:S0167-5877(20)30848-5 [pii].
2021	Collineau L, Carson CA, Moreno MA. Editorial: Antimicrobial usage in companion and food animals: methods, surveys and relationships with antimicrobial resistance in animals and humans, volume II. Front Vet Sci 2021;8:728267 doi:10.3389/fvets.2021.728267 [doi].
2021	Cox GW, Parmley EJ, Avery BP, et al. A one health genomic investigation of gentamicin resistance in Salmonella from human and chicken sources in Canada, 2014-2017. Antimicrob Agents Chemother. 2021 Sep 27:AAC0096621 doi: 10.1128/AAC.00966-21.
2021	Ghosh KK, Janecko N, Agunos A, et al. Evaluation of selective media in antimicrobial surveillance programs capturing broad-spectrum β-lactamase producing Escherichia coli from chickens at slaughter. Can Vet J 2021;62:608-10 doi:cvj_06_608 [pii].
2021	Huber L, Agunos A, Gow SP, Carson CA, Van Boeckel TP. Reduction in antimicrobial use and resistance to Salmonella, Campylobacter, and Escherichia coli in broiler chickens, Canada, 2013–2019. Emerg. Infect. Dis. 2021, 27, 2434–2444, doi:10.3201/eid2709.204395.
2021	Léger A, Lambraki I, Graells T, et al. AMR-Intervene: a social-ecological framework to capture the diversity of actions to tackle antimicrobial resistance from a One Health perspective. J Antimicrob Chemother 2021;76 doi:10.1093/jac/dkaa394.
2021	Lambraki IA, Majowicz SE, Parmley EJ, Wernli D, Léger A, Graells T, Cousins M, Harbarth S, Carson C, Henriksson P, Troell M, & Jørgensen PS.Building social-ecological system resilience to tackle antimicrobial resistance across the One Health spectrum: Protocol for a mixed methods study. JMIR Research Protocols 2021; 10(6) doi:10.2196/24378.
2021	McDonald KL, Garland S, Carson CA, et al. Measures used to assess the burden of ESBL-producing Escherichia coli infections in humans: a scoping review. JAC Antimicrob Resist 2021;3:dlaa104 doi:10.1093/jacamr/dlaa104 [doi].
2021	Vogt NA, Hetman BM, Pearl DL, Vogt AA, Reid-Smith RJ, Parmley EJ, Janecko N, Bharat A, Mulvey MR, Ricker N, Bondo KJ, Allen SE, Jardine CM. Using whole-genome sequence data to examine the epidemiology of Salmonella , Escherichia coli and associated antimicrobial resistance in raccoons (Procyon lotor), swine manure pits, and soil samples on swine farms in southern Ontario, Canada. PLoS One 2021;16(11) doi: 10.1371/journal.pone.0260234.
2020	Collineau L, Chapman B, Bao X, et al. A farm-to-fork quantitative risk assessment model for Salmonella Heidelberg resistant to third-generation cephalosporins in broiler chickens in Canada. Int J Food Microbiol 2020;330:108559 doi:S0168-1605(20)30053-2 [pii].
2020	MacKinnon MC, Sargeant JM, Pearl DL, et al. Evaluation of the health and healthcare system burden due to antimicrobial-resistant Escherichia coli infections in humans: a systematic review and meta-analysis. Antimicrob Resist Infect Control 2020;9:200 doi:10.1186/s13756-020-00863-x [doi].
2020	Moffat J, Chalmers G, Reid-Smith R, et al. Resistance to extended-spectrum cephalosporins in Escherichia coli and other Enterobacterales from Canadian turkeys. PLoS One 2020;15:e0236442 doi:10.1371/journal.pone.0236442 [doi].
2020	Moreno MA, Collineau L, Carson CA. Editorial: Antimicrobial usage in companion and food animals: methods, surveys and relationships with antimicrobial resistance in animals and humans. Front Vet Sci 2020;7:63 doi:10.3389/fvets.2020.00063 [doi].
2020	Otto SJG, Levett PN, Reid-Smith RJ, Pearl DL, Daku D, Nagle E, Horsman GB, McEwen SA. Antimicrobial Resistance of Human Campylobacter Species Infections in Saskatchewan, Canada (1999-2006): A Historical Provincial Collection of All Reported Cases. Foodborne Pathog Dis. 2020 Mar;2707. doi: 10.1089/fpd.2019.2707.
2020	Racicot M, Comeau G, Leroux A, et al. Expert elicitation to estimate the relative risk of food safety criteria included in the establishment-based risk assessment model for Canadian hatcheries. Foodborne Pathog Dis 2020;17:641-65 doi:10.1089/fpd.2019.2784 [doi].
2020	Racicot M, Comeau G, Tremblay A, et al. Identification and selection of food safety-related risk factors to be included in the Canadian Food Inspection Agency's Establishment-based Risk Assessment model for Hatcheries. Zoonoses Public Health 2020;67:14-24 doi:10.1111/zph.12650 [doi].
2020	Romero-Barrios P, Deckert A, Parmley E, et al. Antimicrobial resistance profiles of Escherichia coli and Salmonella isolates in Canadian broiler chickens and their products. Foodborne pathogens and disease 2020;17 doi: 10.1089/fpd.2019.2776.
2020	Sanders P, Vanderhaeghen W, Fertner M, et al. Monitoring of farm-level antimicrobial use to guide stewardship: overview of existing systems and analysis of key components and processes. Front Vet Sci 2020;7:540 doi:10.3389/fvets.2020.00540 [doi].
2020	Wernli D, Jørgensen P, Parmley E, et al. Evidence for action: a One Health learning platform on interventions to tackle antimicrobial resistance. Lancet Infect Dis 2020;12:e307-e311 doi: 10.1016/S1473-3099(20)30392-3.
2019	Carson C, Li XZ, Agunos A, et al. Ceftiofur-resistant Salmonella enterica serovar Heidelberg of poultry origin - a risk profile using the Codex framework. Epidemiol Infect 2019;147:e296 doi:10.1017/S0950268819001778 [doi].
2019	Collineau L, Boerlin P, Carson CA, et al. Integrating Whole-Genome Sequencing Data Into Quantitative Risk Assessment of Foodborne Antimicrobial Resistance: A Review of Opportunities and Challenges. Front Microbiol 2019;10:1107 doi:10.3389/fmicb.2019.01107 [doi].
2019	Collineau L, Phillips C, Chapman B, et al. A within-flock model of Salmonella Heidelberg transmission in broiler chickens. Preventive veterinary medicine 2019;174 doi: 10.1016/j.prevetmed.2019.104823.
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2013	Agunos A, Carson C, Léger D. Antimicrobial therapy of selected diseases in turkeys, laying hens, and minor poultry species in Canada. Can Vet J 2013;54:1041-52 doi:cvj_11_1041 [pii].
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CIPARS research project summaries

Publication Year	Summary title
2022	Research summary: antimicrobial use in lactating sows, suckling and nursery pigs

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2025-09-18

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